After their brief but fateful encounter, Iska and Alice made an impression on each other, resulting in some sleepless nights. Despite being on the opposing sides of the war, they soon learn that they have much more in common than they thought.

Alice is forced to kidnap Iska. Afraid of what will happen to him if word gets out, Alice orders Rin to take them to the Prison Sector to decide their next move. Meanwhile, the members of Unit N07 infiltrate the Sovereignty to get Iska back.

The Empire's experimental weapon, Object, goes after Sisbell. It also detects Mismis' astral energy. Iska and his team must fight Object to save Sisbell and to stop it from uncovering Mismis' secret. However, it seems Object has gone through an upgrade.