Encountering a derelict spaceship, the Alphans respond to an automated distress signal. On board, they discover what remains of the once-great civilisation of Daria: an elite group which maintains control of the ship and a tribe which has descended into savagery. The Alphans are appalled when they discover what measures the Darians have taken to survive.

While exploring an asteroid, the Alphans injure an alien trapped within. Bringing him to Alpha, they discover his wounds have completely healed. The indestructible Balor is a scientist whose people had discovered the secret of immortality. Balor is a psychopath, offering a drastic solution to his people's apathy; now freed of the eternal prison, he plans to spend eternity practicing the art of pain and torture, with the Alphans as his subjects.

A lush Earth-type planet holds the promise of a new home for the people of Moonbase Alpha. When the reconnaissance Eagle returns, it carries an unexpected passenger: Helena's husband, who died five years ago. The mysterious Lee Russell tells the Alphans that death awaits them on the new planet. The Alphans ignore his warning and unknowingly descend into a world of antimatter.

After an encounter with a space-time anomaly, the Alphans find their Moon back in the Solar System on a course to re-enter Earth orbit. The celebration ends when it becomes apparent Earth is an inhospitable wasteland. The mystery deepens when they discover a duplicate Moon already in orbit and a duplicate Moonbase Alpha lying empty and deserted.

Dan Mateo, hoping to unlock the secret of communication with plants, unleashes a killing force from the depths of his own mind. This macabre spectre seeks vengeance for Mateo's horrible death—which has not yet occurred. Bridging the span between science and the supernatural, the Alphans hope to break the cycle and exorcise the ghost without killing the man.

The wandering Moon suddenly changes course and comes to a halt in the vicinity of a dead world. As Alpha's power fails, the only hope for survival is to evacuate to the planet, which was ravaged by a nuclear war in the distant past. Searching for answers, a team is sent to the surface, where they discover the shocking truth of the origin of Mankind.

An Eagle is sent onto the surface of the planet Psychon, which has titanium, needed for repairs to the Alpha Base. It fails to return and is used by Psychon scientist Mentor as a bait with which to entice other members of the Alphan crew onto the planet. Mentor is building a computer but it will be fuelled by the living brains of humans, and he has his eye on those of the Alphan crew. Fortunately his daughter, the shape-shifting Maya, does not share her father's views and is on the side of the Alphans.

The arrival of the Alphans on another planet seems to cause a change in its atmosphere, setting off pollution and poisoning of the water. They meet Zoran, the sole survivor of the last exploratory force, who tells them that the planet is controlled by an immortal being - with whom Koenig must parley if he and his crew are to leave the planet alive.

The Dorcons -the most powerful race in the galaxy -demand that the Alphans hand Maya over to them. Koenig refuses, until Moonbase Alpha is savagely attacked and invaded! Then, having let them take Maya he makes a desperate attempt to save her....

The seven minute clip features only Zienia Merton reprising her role as Sandra Benes delivering a final message to Earth as the only crew member left while a massive exodus to a habitable planet takes place with the rest of the crew. This basically gave the series the finality it never had in its initial run.