Ittoki has suudenly been urged to be come a ninja. After a talk with Tokisada, a ninja feared as the "Demi-god," Ittoki reluctantly agrees. But to get inito the Ninja Academy, Ittoki has to pass the transfer admission exam.

Ittoki arrives at the Ninja Academy. Meeting the kind and chipper Kirei and the beautiful and graceful Ryoko gives Ittoki hope about life at the Academy, but the Koga students' influence threatens to make life miserable.

Ittoki decides to give the secret Ninja Core to Kidou. The Iga ninjas oppose it as a declaration of defeat. Kirei, Ryoko, and Suzaku find new resolve. Meanwhile, Iga's traitor is making moves.