At a time when large fish are rapidly disappearing from the world's oceans, one giant is making a comeback in Florida. The Goliath Grouper was facing extinction when it became a protected species in 1990. Since then, the population has had a chance to recover. Now, some members of the recreational fishing community are pushing to re-open the fishery. But scientists studying the colossal, slow-to-mature fish say such a move would be premature. Changing Seas joins scientists in the field to learn more about the life history of these awe-inspiring fish.

NOAA's Aquarius Reef Base is the only undersea research station operating in the world today. Located just three and a half miles offshore from Key Largo, Florida, at a depth of 60 feet, aquanauts spend ten day missions living and working on the seafloor. Changing Seas observed scientists during a recent mission as they studied the impacts ocean acidification is having on local reef ecosystems. Ocean acidification is caused by a change in the water's chemistry that could have potentially devastating impacts on corals in the future.

In the deep waters off Florida's Atlantic coast grow magnificent structures, capable of reaching 300 feet in height. These are the corals of the deep sea. Porcelain-white and centuries old, few humans have seen these delicate reefs. The Ivory Tree Coral, Oculina varicosa, and Lophelia pertusa flourish in harsh, sunless environments, yet these branch-like formations provide food and shelter for a variety of deep water organisms. Rich in biodiversity, this mysterious underwater kingdom is threatened by destructive fishing practices such as bottom trawling. However, a recently proposed 23,000 square mile marine protected area could save these fragile reefs from ruin.

An ever-growing demand for fresh seafood has pushed wild stocks around the world to the brink. Aquaculture is one alternative to meet the increasing need for fish and crustaceans. Some aquaculture methods have been highly criticized for their negative environmental impacts, but other, more environmentally friendly techniques, are being perfected at various research institutions in Florida. Changing Seas meets with experts who produce fish for food production and to replenish depleted wild populations.

How do you count two fish, three fish or even a school of fish? In Dry Tortugas National Park, located 70 miles from Key West, Florida, a group of scientists have joined forces to conduct a massive fish census. In this unprecedented collaboration, experts from four different agencies unite to count and analyze fish data from select sites. Changing Seas follows highly-skilled science divers as they determine the size of fish populations in hopes of better understanding how fishing pressures and environmental changes affect populations of marine resources within the park.

Bottlenose dolphins are a beloved Florida icon. But, recent studies show disturbing signs of immune system dysfunction and disease plaguing this charismatic mammal. These problems might be linked to legacy contaminants and other pollutants which bio-accumulate up the ocean food chain. Changing Seas meets with experts for an in-depth look at the health status of Florida's wild bottlenose dolphins.

An ancient species of flowering plants that grow beneath the surface of the world's oceans, seagrasses link coastal coral reefs with mangrove forests along the coastline. Today, these "prairies of the sea," along with mangroves, are declining globally. Scientists fear the diminishing vegetation could lead to an ecosystem collapse from the base of the food chain all the way to the top. Changing Seas joins experts in the field as they work to restore Florida's vital mangroves and seagrasses. Seagrasses and mangroves are "hotspots of biodiversity" since they attract and support a variety of marine life. However, damage and removal of these plants continue across the globe at a rapid pace. 'Changing Seas' journeys along Florida's coastline to better understand the significant roles mangroves and seagrasses play within the state.

In the turquoise blue waters of the Florida Keys, a new attraction is drawing scuba divers from around the world: The USNS General Hoyt S. Vandenberg. Laid to rest in the Florida Keys National Marine Sanctuary, the Vandenberg is the world's second largest intentionally sunk shipwreck. In her last mission as an artificial reef, this massive ship is already attracting a variety of fish and other marine life. Now, natural resources managers are trying to determine what impact this artificial reef has on fish populations and the health of the surrounding natural reefs.

Sharks are beleaguered species. The oceans' most formidable apex predators are overfished worldwide for their fins, which are considered a delicacy in many Asian countries. Shark populations have declined by up to 90 percent in some cases. But much is still unknown about the animals. Tiger sharks in particular display behaviors that are not well understood. Known to travel long distances, these fish have a broad diet and spend time in shallow, near-shore habitats as well as the depths of the open ocean. Scientists use satellite tags and DNA forensic tools to better understand their migration patterns. Such information is crucial for resource managers to make more informed fisheries management decisions in the future.

They are some the ocean's tiniest inhabitants. On coral reefs, microorganisms are copious creatures. But in a world that's invisible to the naked eye, drastic changes are taking place. Throughout Florida, scientists painstakingly work to identify key players within this microbial community. Recent breakthroughs revealed a direct link between a human pathogen and a devastating coral disease. With corals under immense stress, experts are using advanced genetic tools and a former aquarium "pest" to better comprehend these microscopic organisms. With experimental sites in the lab and in the sea, what will microbes reveal about coral health? How do human activities impact the microbial balance on the reef?

Join researchers from the Reef Environmental Education Foundation and the Cayman Islands Department of Environment as they study one of the last great reproductive populations of Nassau Grouper. Normally a solitary species, during the winter full moons Nassau Grouper travel, sometimes over great distances, to "group" together and spawn. While most of the known spawning sites in the Caribbean have been fished out over the years, the west end of Little Cayman in the Cayman Islands is home to largest known reproductive spawning aggregation of this endangered species.

On the southern tip of the Florida Everglades, the Shark River meets the Gulf of Mexico. This estuary is home to a number of predators, including the alligator and the bull shark. But despite its wild nature, the Everglades ecosystem is in trouble. Humans have greatly reduced water flows across the famed "River of Grass." Now, a large scale restoration project aims to re-direct some of the fresh water back into the Everglades. A team of scientists from Florida International University has been studying predators in the estuary. Their goal is to better understand how these animals will respond to the changes in water flows, to ensure they continue to fulfill their critical ecological role in the food web. This episode is a co-production of Symbio Studios and WPBT2.

While Elkhorn and Staghorn corals have undergone a drastic decline in the Caribbean, their hybrid, "Fused Staghorn," is increasing in numbers in parts of the region. One scientist is studying the animals in Belize to see if the hybrid might be better equipped to deal with environmental stressors than its parents.

In the Florida Keys, divers from around the country learn how to map shipwrecks and apply their skills on a mysterious 19th Century slave ship. When diving isn't possible, professional explorers use high-tech tools to scan objects buried beneath the seafloor.

In the cold, deep waters of the Gulf of Mexico, little-known animals spend their entire lives in near darkness, far removed from our human world. Until now, little research has been conducted on these creatures of the deep, keeping much of their lives a mystery. Then, in April of 2010, the Deepwater Horizon oil rig exploded, setting off the largest marine oil spill in the history of the petroleum industry. Roughly 4.9 million barrels of crude oil gushed out of the well at a depth of 5-thousand feet. In the disaster's aftermath, many questions arose about what lives in the deep waters of the Gulf, and how these animals may have been impacted by the oil. To answer these questions, scientists from the Deep-C Consortium's ecology team conduct regular research trips in the area.

Scientists with the Global Reef Expedition are on a six year mission to study remote coral reefs around the world. While in French Polynesia, the experts conduct extensive habitat mapping to create one of a kind seafloor atlases. Scientists also assess the health of the reefs to compare and contrast the resilience of reef systems over a large geographical area.

Crinoids have been around in various forms since before the age of dinosaurs. Now experts descend into the deep to study the animals from a submersible.

Each summer, the world's largest known aggregation of whale sharks occurs just off the coast of Cancun, Mexico, giving experts the opportunity to learn more about the largest fish in the sea.

The unique oceanic conditions of the Galápagos Islands serve as a perfect natural laboratory to study how climate change may impact corals in the future.

Strange and prehistoric-looking, Smalltooth Sawfish were once coveted by anglers as popular trophy fish. But habitat loss and overfishing have greatly reduced the animals' range and landed them on the endangered species list in 2003.

Until recently there was scientific consensus that sponges were the first animals to branch off the “Animal Tree of Life,” a kind of family tree for all living and extinct animals on earth. But recent DNA research has cast doubt on that theory, with some scientists suggesting that ctenophores, also known as comb jellies, are an older lineage.

Every winter, hundreds of manatees aggregate at Crystal River, Florida, attracted by the warmer, spring-fed clear waters. This sanctuary is also a treasure for scientists, who take advantage of these manatee gatherings to study them. From decades of visual ID studies to the most cutting-edge DNA research, experts hope that science will help conserve this beloved marine mammal.

In the remote Pacific, the islands of Maug rise out of the sea. Formed by an ancient volcano, shallow hydrothermal vents are found close to coral reefs inside the submerged caldera. These vents emit levels of CO2 that can be expected in the world’s oceans by the end of the century, making these waters a natural laboratory for scientists studying the impacts of ocean acidification on coral reefs. Co-produced with Open Boat Films.

The Blue Heron Bridge in Riviera Beach, Florida, is known as one of the best shore dives in the United States. What appears as an unlikely dive site at first is home to a rich variety of marine life, ranging from tiny nudibranchs to manta rays. Underwater photographers are documenting what lives beneath the bridge, and a scientist is studying how two species of octopus co-exist there.

Dr. Denise Herzing has dedicated her career to studying wild Atlantic spotted dolphins in the Bahamas. She researches the animals’ social structure, behaviors and communication. Now modern technology is making it possible to correlate the dolphins’ sounds and behavior, bringing experts closer to decoding dolphin communication.

On a shipwreck near Key West lives a tiny potential new threat. Researchers want to know where this new species came from, and whether its sudden appearance spells disaster for the delicate coral reef ecosystem in the Florida Keys.

While American crocodiles are recovering in parts of their range, their future looks bleak in Jamaica. Habitat loss and poaching have led to a drastic decline in the population. Dedicated experts are working to save the species through research, education, and conservation initiatives.

Flats fishing is popular with recreational anglers in the Caribbean and the Florida Keys. But until recently, little was known about tarpon, bonefish and permit – the species most coveted by sports fishermen. Now scientists are studying the fish to better understand their movements, habitat, and spawning behaviors.

Shore-based, catch and release shark fishing is a popular past time in Florida. But is it having a negative impact on sensitive shark populations? Scientists have teamed up with anglers to study the survival rates of the fish and conduct outreach on best practices.

Along scenic coastlines in the South, waves of mesmerizing green and golden grass stretch to the horizon. This is the salt marsh - a part liquid, part solid landscape that is teeming with life. How do scientists study the salt marsh? And how resilient is it to climate change?

The deep-sea submersible Alvin has brought explorers to extraordinary places for more than 50 years. Now, as Alvin is poised to continue its revolutionary scientific work, a new set of upgrades will take it deeper than ever before.

Tarpon and snook are two of Florida's most iconic game fish. Both species rely on mangrove creeks and ponds when they are juveniles. With half of the state's mangroves lost to development, scientists employ creative solutions to restore and reconnect some of these important habitats to secure the future of the fisheries.

The humpback whale population that migrates between Hawaii and Alaska is considered a conservation success story. When sightings of the animals suddenly dropped, people became concerned. Scientists in both locations are trying to understand what happened to the whales and why.

How does the body size and overall health of humpback whales change across their migratory cycle? A team of researchers studying the animals, which spend part of the year feeding in Alaska and a few months fasting while in their Hawaiian breeding grounds, is making remarkable discoveries.

Kelp forests have played an essential role in the Puget Sound ecosystem for thousands of years. Today, kelp is in decline. Experts work against time to conserve and restore them.

Florida's iconic sea cows are dying in record numbers. Years of declining seagrass beds have eliminated one of the gentle giants' primary food sources. Now wildlife managers have taken the unprecedented step of feeding the animals, while scientists are in a race against time to restore the lost seagrass.