Fourteen year old Miaka Yukiâ's life centred on two things- passing her high school entrance exams, and getting to eat all of her favourite dishes! But when Miaka accompanies her friend Yui to the National Library, her whole life is turned upside down when she finds herself drawn to the Restricted Section, and to a mysterious book entitled The Universe of the Four Godsâ. And, as Miaka and Yuki begin to read the story, they find themselves transported into the world of the book, a magical and mysterious land based on ancient China!

The stress and exhaustion of Miaka’s adventures in the book have finally taken the toll, leaving the Priestess of Suzaku feverish and weak. Concerned over her health, Hotohori decides that the three seishi must take her to see Taiitsukun- the controller of the Universe of the Four Gods and the one person who might have the power to send Miaka back to her own world…

As Miaka and the three seishi approach Taiitsukun’s home on Mount Taikyoku, the controller of the Universe of the Four Gods decides to set them a test by trapping Miaka in a mirror and replacing her with an evil reflection of herself. As her evil duplicate begins causing havoc among the seishi, Miaka realises that she and her reflection must share a connection, and resolves to put a stop to the evil Miaka by taking her own life…

Following a brief reunion, Tamahome decides to ride off and make a quick trip home- giving Miaka the perfect opportunity to sneak after him and find out more about man she loves- including just why he is so interested in making money! But there is danger in store for Miaka as hostile forces in the neighbouring land of Kutou send assassins after her- and it falls to a mysterious new protector to keep her safe…

Miaka and the others have found Chichiri, the fourth seishi, but when he relays news that Kutou is searching for the Priestess of Seiryu, Miaka begins to suspect that the girl they are looking for is none other than Yui! Determined to find her friend without involving anyone else, Miaka slips away from Tamahome’s watchful gaze, and begins making her way to the land of Kutou…

After agreeing to be led to the bandit leader, Miaka realizes the Eiken, the "Leader", is a fat, drunken, slob! Meanwhile, Hotohori worries about Miaka and finally decides to take action. After saving Miaka, a man named Genrou abducts Miaka...

Hotohori, unable to kill Miaka, goes with Tasuki and Miaka to request Myojuan's help to save Miaka. In Kutou, however, having heard of Miaka's illness, Tamahome tries to escape only be caught and severly punished. Meanwhile, once Hotohori, Nuriko, and Tasuki arrive at Myojuan's house, Myojuan reveals Shoka's terrible secret.

Four of five days later, the Suzaku Seven begin to become discouraged as the search for Chiriko, the last of the Suzaku Seven, rages on. They reach Tamahome's hometown, and there Mitsukake performs his healing magic and heals Tamahome's father. However, later that night, Kotou agents attack Miaka and the Suzaku Seven. In the distance, the sound of a flute appears. Who is this young boy?

Miaka, determined to show the letter to Tamahome waits at the tree, keeping her promise. Meanwhile, Nakago catches Chichiri, who went to look for Tamahome for Miaka. It doesn't take long for everyone to realize where Miaka ran off to, including Tamahome who meets Miaka there. Will Tamahome revert back to his old money loving self?...Goodbye.

After Hotohori stabs Tamahome, Miaka runs to him. He tries to grab the sword to kill Suzaku No Miko. Miaka takes the sword and puts it in his hands.

Miaka, Nuriko, and Tasuki are having a good time at the festival, while Tamahome still thinks about what Miaka has said to him. When Miaka finally has a discussion with Tamahome, she explains herself, making Tamahome feel happy again. The trip has just about come, and Tamahome is off to bring some of his family with him. But when Tamahome, Miaka, and Nuriko get there, Tamahome finds that he's in for it...

Tamahome goes to his village, but once there, he finds a terrible fate that has befallen on his family. Suboshi, who swore revenge for the death of his twin brother, Amiboshi, is in battle with Tamahome. Another member of the Seriyu Seven comes into play.

After being attacked by lightning, Tamahome and the other two stayed in an abandoned cave and wait for Chichiri to track them down. Tamahome is still unconscious so Nuriko finds the chance to flirt with Miaka jokingly, by trying to kiss her. When awakened, Tamahome explains he has no chance to protect his loved ones, so he promised himself that he will always protect Miaka. Nuriko himself explains he also has a loved one too that he's unable to protect, which is his sister Korin. At the day she died, Nuriko began dressing like a girl in order to keep Korin with him. Just then lightning struck the cave where they were and Miaka and Tamahome began floating in the sea, and Nuriko manages to carry them off because the bracelets Taiitsukun gave him began transforming into armbands. At last, Chichiri and the others found them. While inside the ship, Soi began challenging Miaka and electrifying the others so they won't be able to save her. Miaka uses Hotohori's holy sword in order to protect herself from Soi, and she manages to defeat her. The storm Soi cast is slowly disappearing, and they finally found Hokkan, the land of Genbu, where the Shinzaho is located.

Nuriko has finally realized he loves the lady Miaka. Fearing for Miaka and Tamahome's relationship, he went to the top of Mount Koku by himself in search of the Shinzaho. Standing before the door guarding the Shinzaho Nuriko is confronted by Ashi-tare, who is a member of the Seiryu seven, and their battle for the Shinzaho begins.

Nakago tells Miaka of what he planned and about the false Taiitsukun. He also tells her that Yui is still a virgin. He also told Yui everyday that Miaka betrayed her. One day she finally believed. Everything that happened was all according to Nakago's plans. Tomo causes the other of the Suzaku to fall into his trap. Tamahome finally catches up with Miaka and runs into Nakago who insinuates that he has "coupled" with Miaka. Tamahome attacks Nakago and actually wounds him with a red lightning. Soi come to Nakago's rescue. Tamahome finds Miaka and she wakes up in a lot of pain. Miaka believes Nakago had sex with her and Tamahome just looks dumbstruck. The others are still stuck in the mirage. Miaka and Tamahome stop at a lake to rest and eat. Miaka is really messed up in logic. She decides she can't marry Tamahome.

Soi reveals to Miaka that Nakago failed to rape her and that Tomo is fighting Tamahome and has him trapped. Amiboshi helps destroys Tomo’s illusion creating shell with his flute. Miaka arrives and Tamahome defeats Tomo. Miaka excitedly tells Tamahome that she is unspoiled. Amiboshi is trapped and Tamahome is stabbed and dragged off a cliff by Tomo (They only defeated an illusion of him). Tomo traps Miaka with an illusion created from her life force. He explains to Amiboshi that because of the manner in which the illusion was created Miaka is trapped inside the illusion physically, as opposed to just mentally. Tomo puts himself into the illusion as Aono, with the intention of taking Maika’s virginity. He uses the illusion to convince Miaka that she has a crush on him. Miaka sees Tamahome’s name in a book she is studying and becomes confused. Aono stops by and gives her his older brothers lucky exam pencil, putting an end to her confusion. Miaka agrees to go out with him. Aono asks if he can call her “Miaka” and asks her to call him “Tomo.” Back in the real world, Keisuke calls their mother and explains to her that they did not return home because Miaka is studying with him and Tetsuya.

Miaka reads about the constellations of the four gods again and is again confused, but Aono Tomo distracts her by asking her to come to his house to study later. Tamahome’s master find him and releases him from the illusion he was under when he was thrown from the cliff. As Miaka and Tomo pass the library, Miaka feels like something important happened there and tries to figure it out, but Tomo distracts her with a promise of cake. Miaka discovers the cake was a lie and is distracted again by the library, which she can see from Tomo’s window. He distracts her by kissing her. When she is about to give herself to him, she is confused by something she cannot remember. She remembers going into the library with Yui and going into an old book. Tomo tells her that is was just a dream but she continues to remember what happened and breaks the illusion (but is still trapped in it). Tomo has to use all of his life force to keep Miaka trapped and Amiboshi uses this opportunity to break free. He gives his strength to Miaka using his flute. She stabs Tomo in the mark on his forehead using the lucky pencil he gave her. Shin (the shell Tomo used to create illusions and trap Miaka) breaks and Miaka reappears. Amiboshi protects Miaka from Shin, but is defeated. When Tomo is about to kill him Suboshi arrives and kills Tomo. Amiboshi offers Suboshi forgetfulness leaves so that they may live in peace together. Suboshi pretends to accept them, says he loves Yui, and forces the leaves back on Amiboshi. Suboshi attacks Miaka in the same manner in which he thinks Yui was.

Keisuke and Tetsuya finally arrive in Morioka. Miaka asks Tamahome to meet her in the tower that Xing told her the legend about. Tokaki reminds Tamahome that he and Miaka will be split up when Suzaku is summoned. While waiting at the tower, Miaka sees Yui and Nakago. After checking the police station and library, a taxi driver introduces Keisuke and Tetsuya to a friend with old newspapers on microfilm. They find the article regarding the Okuda murder and where it took place. Tamahome goes to the tower and finds Miaka’s hair tie. The rest of the Suzaku Seven join him, and Tasuki fries a monster about to eat him. Tokaki and his wife, Subaru, tell them that Tatara, the guardian of the Shinzaho of Byakko has been taken. Nakago finds Miaka sneaking into where he and Yui are staying. Miboshi, one of the Seiryu Seven, steals Miaka’s voice and Nakago knocks her unconscious. The Suzaku Seven follow Miaka. Keisuke and Testuya arrive at the location where the Okuda murder took place and find it is called Genbu Grotto. Miaka wakes up in a cell with Tatara and Yui enters.

Tatara, one of Byakko Seven was in love with the Priestess of Byakko, Suzuno Osugi. The story of Suzuno and her love with Tatara is just the same as Miaka and Tamahome. 90 years ago, the Priestess couldn't wish to stay with Tatara. They were separated for a long time, until both of their deaths...they were finally together at peace.

Yui succeeds in summoning Seiryuu. Seiryuu turns into a person, enters Yui to grant her his holy power, and they disappear. Summoning Seiryuu causes a shockwave and Chichiri teleports Miaka and the Suzaku Seven back to Konan. Yui wakes up in Kutou and makes her first wish: “Let Suzaku’s strength be sealed away forevermore.” Miaka and the Suzaku Seven meet Hotohori’s new empress, and he tells Miaka that she can marry Tamahome since she is no longer a priestess. Kutou begins to invade and the Suzaku Seven decide they will fight, despite losing their powers. Keisuke and Tetsuya find out that Genbu Grotto was created by being bringing a beast god into the world. Nakago and Soi look into Tomo’s shell, which was all they could recover of him, and see the world the priestesses came from. They talk and Nakago rejects Soi when she confesses her love for him. The Suzaku Seven join the battle against Kutou and encounter the Seiryuu Seven, but are no match for them without their powers. Tasuki throws Hotohori’s holy sword at Nakago, but Soi sacrifices herself to protect him. Yui uses her second wish to return herself and Miaka to their world. Miaka wakes up in her school and Tamahome is there as well.

Tamahome and Suboshi are drawn into battle and in the book, Hotohori and Nakago are in battle as well. This is a battle to the death.

Keisuke tells Miaka that summoning a beast god means becoming a sacrifice for it. Yui calls, Miaka tells her that Suboshi is dead, and they both agree to go to school the next day. Keisuke begs Tamahome to return to the Universe of the Four Gods. Miaka informs Yui about Nakago’s deceit and gives her a letter written by Okuda explaining what the beast gods are. Yui runs off and notices scales on her arm. Nakago kills the Emperor of Kutou and orders his family and government killed. Miaka runs home and catches Tamahome preparing to return. Miaka begs Tamahome not to leave and Tamahome asks to have a wedding ceremony. They have a wedding ceremony and Nakago appears before Yui. Yui confirms what Miaka told her and runs away from Nakago. Tamahome finds Yui and Nakago catches up. Nakago tells Tamahome his plans for conquest and Tamahome tells Nakago that they are characters in a book. They fight, but Tamahome is still no match for Nakago.

Yui has been devoured by Seiryuu and it seems that Nakago's wish was granted to become a Deity. Miaka begins the summoning chant to Suzaku. Yui's final wish was to allow Miaka to be able to summon Suzaku! Miaka merges with Suzakuseikun for her wishes to finally be granted...