Kirito wakes up to find himself inside a mysterious world evoking a fantasy game. His memory fuzzy, he tries to log out, but is unable to return to the real world. After wandering aimlessly, he finds himself underneath a colossal tree.

Asuna infiltrates Rath, the research lab in the Ocean Turtle, where she relentlessly grills Kikuoka about Kazuto's whereabouts. Kikuoka reveals that behind the development of the Soul Translator is a mind-blowing objective of epic scale.

Kirito and Eugeo escape from their cell, only to find their way blocked by Eldrie Synthesis Thirty-One, under orders from Alice to lie in wait for them. Kirito and Eugeo struggle against him until Eugeo realizes that he's seen Eldrie somewhere before.

Kirito and Eugeo have been rescued by the young girl, Cardinal, who has secluded herself inside the Central Cathedral’s Great Library. Cardinal explains to Kirito how the Axiom Church and the Taboo Index came to be, starting with Administrator’s past.

Kirito and Alice reach the communal bath on the nintieth floor. There, they find the Integrity Knight Commander, Bercouli, who's been turned to stone by Chudelkin. Alice breaks down in tears upon seeing her mentor's tragic plight, but then...

Alice dan Kirito bertemu dengan tentera, tetapi keadaan Kirito masih teruk dan gerbang timur tidak akan bertahan lama apabila musuh mereka menyerang secara beramai-ramai.

Apabila Kirito bersemuka dengan ingatan menyakitkan tentang masa silamnya, Asuna bertarung dengan Vassago yang menjelaskan obsesinya terhadap Pendekar Berpedang Hitam.