Charlie accurately predicts where a band of bank robbers will strike next. But when Don and his team confront them, a massive shoot-out occurs leaving four people, including an officer, dead. The outcome disturbs Charlie and he retreats into the family garage to work out an unsolvable math problem that he also plunged into after his mother became ill a year earlier. But Don needs his brother's help and tries to get Charlie to return to the case.

When a five-year-old girl is kidnapped from her birthday party, Don and Terry lead the investigation, but must rely on Charlie's help because the girl's father, Ethan, is also a mathematician. Charlie realizes the kidnapper's motive when Ethan reveals he is close to solving Riemann's Hypothesis, a difficult math problem. If solved, the solution could not only earn him $1 million, but could break the code for internet security and unlock the world's biggest financial secret.

A truck carrying radioactive material is stolen, and the thieves threaten to set off a dirty bomb in L.A. in 12 hours if they aren't paid $20 million. While Don attempts to track down the truck, Charlie tries to come up with the most likely location where the bomb may be detonated to inflict the most damage to the population.

When an Asian teenager is found in the basement of an old downtown hotel where she was apparently being tortured, the investigation soon reveals the girl and three other missing women, are victims of a black market organ-harvesting scheme. Amita assists the FBI by communicating with the girl, who is from the same part of India where Amita's family once lived.

When an assailant opens fire in the FBI offices, Don and his team must determine his motive and possible connection to a dangerous arms dealer who is on trial. After nearly getting shot, Charlie is shaken and reluctant to return to the offices, which hinders his contribution to the case.

The problem of the disposal of toxic waste becomes real to Don, Charlie and the team when several children are injured after a sinkhole collapses underneath a school playground. Charlie attempts to help with the case, but faces opposition from his new boss.

Don talks to his therapist again, and while he's gone, the team races to find an eleven year-old boy being held on a $3 million ransom, and time is running out...

When a former mob hit man on death row suddenly has a change of heart and agrees to confess to his crimes, Don has an uneasy feeling about the whole affair.