An epidemic of unknown origin strikes mankind, killing all adults and rendering the youngsters at the mercy of the vampire kind. Four years later, Yūichirō Hyakuya and his friends make a daring attempt to escape from the vampires, unaware that a mortal trap awaits them.

Four years after escaping, Yūichirō is part of the Japanese Army and is eager to become a member of their special vampire hunting force, the Moon Demon Company, but his reckless behavior leads him to be suspended, until a vampire attacks the local school prompting him to face the enemy against orders.

Yoichi eliminates five horsemen with one attack, and Yu begins the next step of his training. Yu battles against Asuramaru in his mind and defeats Asuramaru by asking to become friends. At the Progenitor Council meeting, Ferid discusses the battle at Shinjuku and has Mika present a video showing Yu's transformation. Krul strikes at Ferid and intentionally misses. Ferid explains that she cannot kill him. Kimizuki struggles in battle against Kiseki-o and faces memories where he was told to kill his sister. He breaks free and is victorious by remembering Yu's feelings for Mika, who are family even though they are not related by blood. Kimizuki and Yu show off their new techniques, and Shinoa and Mitsuba learn the files on the three boys have been erased.