One day, Boruto and Konohamaru rescue Remon Yoimura from an attack. Remon says she has come to Hidden Leaf Village for sightseeing. Boruto and Konohamaru offer to show her around the Leaf and provide some protection as well.

Boruto and Konohamaru pay a visit to Remon's village, but are puzzled by Remon's cold demeanor. It turns out that Remon is a descendant of the Souma, a family that has protected the village from goblins for many generations. Thus, she is not allowed to leave the village freely. Furthermore, an important ritual is to be held shortly, so Kankitsu Akitsuki, Remon's childhood friend, imprisons her to prevent her from seeing anyone.

Konohamaru tries to rescue Remon by checking up on Kankitsu, but he is caught and forcibly taken back to the Leaf Village. Boruto becomes suspicious when he sees Kankitsu alone and acting as if nothing has happened. He decides to investigate the situation, only to be shocked by the sight that unfolds before him! Meanwhile, Konohamaru is disciplined by the Hokage after receiving a complaint from Remon's village.

Konohamaru and Boruto set out again to rescue Remon but find they’ve arrived a little late. Soma has broken the seal and begins his resurrection. Boruto and Konohamaru try desperately to stop this, but none of their weapons and ninjutsu work against him. Watching them, Remon is inspired to carry out her vow and employ the method her ancestor used long ago to seal the monster.

Due to Sasuke’s frequent absences from the village, he hasn’t had time to train Boruto. When Sasuke sends a message home, Boruto takes a peek at its contents and learns that Sasuke will be making a stop at a certain location in the Land of Wind. Determined to be trained by his mentor, he sneaks out of the village.

Boruto manages to reach Sasuke, but he sees his mentor disappear before his very eyes due to an attack by Urashiki Otsutsuki. It turns out that Sasuke, along with the Kazekage and Shinki, was in the middle of battling Urashiki, who was pursuing Shukaku, the One Tail. Gaara uses a Sealing Jutsu and manages to stop Urashiki, but he believes it’s only a matter of time before the jutsu is broken. He orders Shinki and Boruto to go to the Leaf Village to keep Shukaku safe.

Led by Kankuro, Boruto and Shinki guard Shukaku head for the Hidden Leaf Village. But on the way, they engage with a puppet created by the Otsutsuki Clan sent after them in pursuit. Kankuro entrusts Shukaku to Boruto and Shinki, and sends them on ahead so he can confront the enemy alone.

Boruto and Shinki clash, and they ultimately end up going their separate ways. But an Otsutsuki puppet appears before Shinki. Just then, Boruto arrives with Shikadai and Temari, who were on their way to the Hidden Sand. Even with their help, the Otsutsuki puppet proves formidable. Meanwhile, Urashiki breaks through Gaara’s Sealing Jutsu and begins to move once again.

Boruto and Shinki continue on toward the Hidden Leaf Village to fulfill the mission entrusted to them. But Urashiki suddenly appears. Working together, Boruto and Shinki manage to slip away from Urashiki, but escaping him completely proves to be difficult.

Urashiki is determined to get Shukaku's chakra and attacks ruthlessly. Boruto and Shinki form a united front and unleash each of their special jutsu. However, Urashiki proves to be a formidable opponent that neither Sasuke nor Gaara could defeat. Will Boruto and Shinki be able to find a way to counter him?

Boruto and Shinki bring Shukaku to Hidden Leaf Village. Upon arriving at the Uzumaki home, Himawari is completely taken with him, but Shukaku finds the entire situation irritating. When told about the day Naruto became the Seventh Hokage—and how Himawari hurt Naruto and Kurama—Shukaku comes up with an idea.

Boruto becomes fascinated by Jiraiya, Naruto's former mentor. Inspired to train, he goes to Sasuke's house, where Sarada mentions Jiraiya's novel. Convinced that reading the novel is the fastest way to learn about Jiraiya, the search for Make-Out Tactics begins!

Boruto is forbidden to participate in the counterattack on Urashiki because he was previously targeted by the Otsutsuki. Frustrated by this decision, Boruto argues with Naruto when a report comes in that Urashiki has been located.

While chasing down Urashiki, Boruto and Sasuke get hit with a strange Otsutsuki weapon. They find themselves in the Hidden Leaf, but years before Boruto was born. Although there's no sign of Urashiki, Sasuke thinks they should proceed carefully. Suddenly, a very young Naruto appears with Jiraiya and the two start questioning the "outsiders."

Boruto and Sasuke end up staying in the Hidden Leaf under the watchful eyes of Naruto and Jiraiya. At first, Boruto feels uncomfortable being with Naruto, but gradually warms up to him. Meanwhile, a group of genin—Sakura, Hinata, and Neji—are summoned for duty along with their chunin leader, Shikamaru. Boruto and Naruto head to the designated meeting place and find something unexpected.

Urashiki appears to steal the chakra of Nine Tails from Naruto, but his attempt is unsuccessful. In order to save Naruto, Boruto, Sasuke and Jiraiya pursue Urashiki. Jiraiya then notices that the malevolent Nine Tails Chakra has started filling the air.

At Jiraiya’s suggestion, Boruto and Naruto train to synchronize their chakra, but this turns out to be more difficult than expected. Boruto then runs into Neji and decides to talk to him. Sasuke, upon seeing a discouraged Naruto, is unable to ignore him.

Boruto and Naruto resume their training. Meanwhile, Sasuke is at a loss for words when Jiraiya expresses doubt about his identity. However, Jiraiya says that he will not pry if they join forces to come up with a strategy to defeat Urashiki.

Another intense battle begins for Boruto, Sasuke and Jiraiya as they try to defend Naruto from Urashiki. Sasuke protects Naruto, allowing Boruto and Jiraiya to barely escape with him.

Boruto's quick thinking exposes Urashiki's trick that enables him to see into the future and they manage to inflict some damage. But before they can breathe a sigh of relief, Urashiki emerges again with an even stronger move, and they're back in the same predicament!

The battle against Urashiki is over, and it's time for Boruto and Sasuke to return to the place where they rightfully belong. Boruto is wistful about leaving Jiraiya and Naruto. Suddenly, Jiraiya makes a request to Sasuke.