At the suggestion of Shino Aburame, their homeroom teacher, Boruto and his classmates split off into gendered teams to capture flags placed on the roof. Boruto and the rest of the boys' team quickly head for the roof, but they struggle with traps and the girls' team, led by Sarada Uchiha and Chocho Akimichi. Desperate to capture a flag before the girls' team, Boruto tries out a Summoning Jutsu, but he ends up summoning something unexpected!

Boruto urges his friend Kagura to return with him, but Kagura rejects him and begins to attack. Although Boruto is desperate to save him, Kagura once again falls under a spell and is unable to defy Shizuma. Then someone steps in between the two as they battle. It's Mitsuki, and he has obtained intel about the rebellion. Just what is the intel, and can Boruto save his friend?

Boruto and his classmates decide to go camping to try to catch the mysterious fish, the Eternal Carp, said to be unforgettably delicious. With graduation coming up this could be the last time the class does something together, so Boruto figures this is the perfect opportunity to catch one, but the fish proves to be very elusive.

It is time for the graduation exams. Boruto and the others complete the first-round written exam and move on to the next. The second round has the students facing off against Kakashi—the previous Sixth Hokage—and the academy instructors in actual combat situations. With the goal to "steal the bell" from Kakashi, every student rushes into action. However, the going is rough against Kakashi and the teachers who guard him. Somehow, Boruto reaches Kakashi first, but the Sixth Hokage shows no mercy. After a tough fight, he coldly tells Boruto that he's not suited to become a ninja!

Originally from the Village Hidden in the Sound, Mitsuki has made up his mind to become a Hidden Leaf Shinobi. In the past, having lost his memory, Mitsuki finds himself in unfamiliar surroundings, unsure of his identity and motive. Mitsuki faces a difficult decision, but his thoughts and feelings that had once been shrouded in mystery, now come to light

Boruto is dissatisfied with the team's easy and lackluster missions since its first one. Team 7 is assigned to capture a suspect who has barricaded himself inside a bank. Excited to show off his skills again, Boruto and the team rush to the site. But the suspect turns out to be a timid individual who was recently fired. A possibility soon arises that a certain organization could be involved!

During the protests, the Byakuya Gang attacks Katasuke's research center, which has been developing new technology for Scientific Ninja Tools. Shikadai figures out what the Byakuya Gang's goal is and rushes after them in pursuit with Boruto close by. Even a weak "pawn" can become strong in one move—what are the two friends who bonded through shogi seeking?

Naruto and Sasuke fight against Momoshiki Otsutsuki. Momoshiki gets defeated, but he's helped by Katasuke and his Scientific Ninja Tool. In the end, Boruto puts an end to Momoshiki's life. While dying, Momoshiki talks to Boruto and gives him the Karma Seal.

The ninja assigned to the Hidden Leaf Gate are attacked, and Mitsuki disappears. Boruto and Sarada are unaware of this when their scheduled mission is suddenly canceled. Worried, the two start searching for their teammate. When they learn that all the jonin have been summoned by the Hokage, they set out to find out what's going on.

Kokuyou confronts Boruto and the others. Kokuyou, whose only goal is to become strong, is so powerful that he's taken down the Leaf ninja pursuing Mitsuki. He easily drives Boruto and his team into a corner. Just then, backup appears. Boruto and his friends manage to overcome Kokuyou, and finally catch with up Mitsuki.

Kakou appears to take the former Tsuchikage back to the village, but Boruto confronts him and they fight. Kakou uses a rare and powerful Particle Style and pushes Boruto to the edge. Meanwhile, Shikadai manages to slip through the Akuta guards and heads for the Hidden Leaf to report on the situation in the Hidden Stone.

Ku appears once again to provoke and attack Boruto. Meanwhile, reevaluating his true will and intent, Ohnoki prepares for a fight to the death in order to stop Ku from doing any more harm.

Namida from Team 15 uses an earsplitting cry that can temporarily paralyze or knock out an opponent, but she’s unable to fully control this special jutsu. When she panics, the jutsu can affect everyone nearby, even her allies. Worried that she’ll become a hindrance to missions, Namida decides to stop crying to prevent the jutsu from accidentally activating.

Boruto and Sarada confirm Juugo’s appearance. However, Juugo is under the influence of a ‘Cursed Seal’, and has transformed into a ferocious monster. The ‘Cursed Seal’ is one of Orochimaru’s research materials. Even though it amplifies strength and stimulates that attack instincts of living beings, Juugo is someone who possessed that capability from birth. Juugo has lost control over himself and begins to attack, putting up a difficult fight against Boruto and his comrades. Even though he’ll be getting assistance from his friends, will they cause damage to Juugo somehow?!

Urashiki is determined to get Shukaku's chakra and attacks ruthlessly. Boruto and Shinki form a united front and unleash each of their special jutsu. However, Urashiki proves to be a formidable opponent that neither Sasuke nor Gaara could defeat. Will Boruto and Shinki be able to find a way to counter him?

Sumire's wish comes true and she joins the Scientific Ninja Tools Team, leaving only Wasabi and Namida on Team 15. A new member, Tsubaki Kurogane, a young girl who hails from the Land of Iron, joins them.

Boruto and the team are waiting for the escape boat when Tsukiyo appears. Boruto and his team fight desperately in order to protect Kokuri, but they're tormented by Tsukiyo's jutsu as time threatens to run out on their prison break!

Boruto rushes to save Tento, but Shojoji the leader of the Mujina Gang blocks his way. Boruto dodges to protect Tento, but Shojoji and his Corpse Clone Jutsu prove to be too powerful. In the midst of all this, the mark on Boruto's palm reacts and paralyzes him.

Boruto and the team are determined to reach Asaka, the eldest brother of the Land of Silence Ninja, before Deepa does. They catch up to him, but Deepa arrives soon after and attacks ruthlessly. They try to counter, but nothing seems to work. In the midst of their panic, Victor appears!

The Yamanaka Clan, who have been tracking the village’s ingoing and outgoing traffic with their advanced sensory abilities, spearheads a plan to create a new sensory system and an operational test is conducted.

Son of Naruto Uzumaki, Boruto, follows his father's footsteps along with his friends to become great ninja. Throughout all their adventures, Boruto is determined to make his mark in the ninja world and live outside of his father's shadow.

After finding out that Konohamaru and Mugino have gone missing, Team 7 is ordered to go to their last known location and investigate what happened. Team 7 and Katasuke arrive at the airship wreckage, but are attacked by strange puppets.

The showdown between Team 7 and Ao begins. Team 7 works together to bring Ao down with various attacks and jutsu, but he proves to be a difficult adversary due to his use of scientific ninja tools.

Kawaki collapses and is tormented by nightmares from his childhood. As a child, Kawaki endured an abusive father, until one day a man appeared before him— none other than Jigen, the leader of Kara.

Kawaki watches a Shinobi Hand-to-Hand Combat match between Naruto and Boruto. Boruto uses his specialty, the Shadow Clone Jutsu, to take on his father, but he struggles. Upon seeing this, Kawaki tells Boruto to use the power of his Karma. Meanwhile, Kawaki becomes interested in the Shadow Clone Jutsu that Naruto and Boruto like to use.

Boruto opens a portal and transports Isshiki and himself to another dimension. Naruto and Sasuke follow them, and the final battle against Isshiki begins.

Kawaki has a hard time getting used to school life, but he succeeds in becoming friends with Princess Kae, the object of his guard mission. Meanwhile, Kae wants to get to know her classmates and invites them all to a tea party at her mansion. Since Kawaki has his mission and cannot let Kae out of his sight, he goes along. Despite feeling out of place at the party, Kawaki does his best to fit in, but then he senses something unusual…

Osuka Kamakura is kidnapped for ransom along with Himawari. When the ringleader finds out she’s the daughter of the Hokage, he starts thinking of ways to use her to his advantage as well. Meanwhile, Kawaki does what he can to locate Himawari and Osuka with the help of Kae and Neon Asakusa

Hana, who has recovered from her injuries, and Kawaki, who is back guarding Kae, return to class. Life at the Academy gradually goes back to normal. Meanwhile, Hana learns that about the attempt made on Kae’s life and regrets her inability to prevent it. She returns to the scene of the incident to recount what occurred.

Boruto accompanies Sasuke to a hawk trainer to obtain a messenger hawk.

There, Boruto and Sasuke hear about a person who sells rare animals and decide to investigate. Boruto then befriends a boy named Tsuzura Shitakiri. Because of his mother, Tsuzura doesn’t go to school and has given up on the things he really wants to do. His only friend is a hawk that is unable to fly due to an injury. He takes good care of this hawk in the hope that it can soar the skies once again.

While everyone is exhausted from Ouga’s experiments, a test subject talks about their goals, which leads everyone to talk about what they want to do if they survive. The mood is lightened, but Ouga begins a new experiment. Due to the careless actions of certain test subjects, everyone's lives are in danger once again.

Naruto falls ill, and Sasuke goes to the Tatar Observatory to try to find a cure.

Sasuke and Sakura work together to gather information concerning the Ultra Particles. Unfortunately, there is still much they don’t know, and they are unable to figure out where to get answers. Eventually, Sasuke finds a clue to the whereabouts of the Ultra Particles from something his cellmate mentions. Meanwhile, Sakura discovers a hint to unraveling the mystery of the Map of the Heavens from a game called Star Lines. Having finally gathered the information they need, Sasuke and Sakura try to obtain the Ultra Particles. However…

In order to gain the strength to fight Code, Boruto invites Kawaki to train, along with Sarada and Mitsuki. Unfortunately, because Kawaki is in a rush, they end up arguing about their training methods.

Meanwhile, at Boro’s facility, Eida has awakened. Eida is another one of Amado’s creations who has the power of the Senrigan, which allows her to see events in the present and the past. Code is powerless against her other ability…